Summary



Journal publications 2
Communications in international conferences 1
Communications in national conferences 3
Communications in international workshops 3
Communications in national workshops 4
Seminars 2
Posters in national conferences 1
bioRxiv preprints 2
Reports 1
Total 19



Publications and communications details

Journal publications
  • Camille Marchet, Pierre Morisse, Lolita Lecompte, Arnaud Lefebvre, Thierry Lecroq, Pierre Peterlongo, Antoine Limasset. ELECTOR: Evaluator for long reads correction methods. NAR Genomics and Bioinformatics, 2020.
  • Pierre Morisse, Thierry Lecroq, Arnaud Lefebvre. Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph. Bioinformatics, Volume 34, Issue 24, 15 December 2018, Pages 4213-4222.
Communications in international conferences
  • Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment. RECOMB-SEQ 2019, Washington, USA, May 2019. (slides)
Communications in national conferences
  • Pierre Morisse, Thierry Lecroq, Arnaud Lefebvre. Long-read error correction: a survey and qualitative comparison. Actes des 21èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Montpellier, France, July 2020. (slides)
  • Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment. Actes des 20èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), pages 54-61, Nantes, France, July 2019. (slides)
  • Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. HG-CoLoR: Hybrid-Graph for the error Correction of Long Reads. Actes des 18èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), pages 67-74, Lille, France, July 2017. (slides)
Communications in international workshops
  • Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment. Data Structures in Bioinformatics (DSB) 2019, Dortmund, Germany, February 2019. (slides)
  • Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. Hybrid correction of long reads using a variable-order de Bruijn graph. Data Structures in Bioinformatics (DSB) 2018, Helsinki, Finland, May 2018. (slides)
  • Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. Enhanced de Bruijn Graphs. Mathematical foundations in Bioinformatics (MatBio) 2017, London, United-Kingdom, September 2017. (slides)
Communications in national workshops
  • Pierre Morisse, Thierry Lecroq Arnaud Lefebvre. Impact of the dataset characteristics on the quality of long read error correction. SeqBIM 2019, Marne-La-Vallée, France, November 2019. (slides)
  • Pierre Morisse, Antoine Limasset, Camille Marchet, Arnaud Lefebvre, Pierre Peterlongo, Thierry Lecroq. LoRSCo: Long Reads Self-Correction. SeqBio 2018, Rouen, France, November 2018. (slides)
  • Camille Marchet, Pierre Morisse, Lolita Lecompte, Antoine Limasset, Arnaud Lefebvre, Thierry Lecroq, Pierre Peterlongo. ELECTOR: EvaLuator of Error Correction Tools for lOng Reads. SeqBio 2018, Rouen, France, November 2018. (slides)
  • Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. HG-CoLoR: enHanced de Bruijn Graph for the error Correction of Long Reads. SeqBio 2017, Lille, France, November 2017. (slides)
Seminars
  • Pierre Morisse. Correction de données de séquençage de troisième génération. Theoretical Computer Science Seminar, Rouen, France, March 2019. (slides)
  • Pierre Morisse. Extracting genomic k-mers in long reads. Symbiose Seminar, IRISA, Rennes, France, December 2017. (slides)
Posters in national conferences
  • Camille Marchet, Pierre Morisse, Lolita Lecompte, Antoine Limasset, Arnaud Lefebvre, Pierre Peterlongo, Thierry Lecroq. ELECTOR: EvaLuation of Error Correction Tools for lOng Reads. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) 2018, Marseille, France, July 2018. (poster)
bioRxiv preprints
  • Pierre Morisse, Thierry Lecroq Arnaud Lefebvre. Long-read error correction: a survey and qualitative comparison.
  • Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment.
Mémoires
  • Pierre Morisse. Correction de données de séquençage de troisième génération. Université de Rouen Normandie, 2019. (manuscript in French) (slides in French)
  • PhD defended of the September 26, 2019, before a jury composed of:

    • M. Guillaume BLIN, PR, Université de Bordeaux, Reporter
    • Mme Christine GASPIN, DR, INRA, Toulouse, Reporter
    • M. Gregory KUCHEROV, DR, CNRS – Université Paris-Est Marne-La-Vallée, Examiner
    • M. Thierry LECROQ, PR, Université de Rouen Normandie, Supervisor
    • M. Arnaud LEFEBVRE, MCF, Université de Rouen Normandie, Advisor
    • M. Pierre PETERLONGO, CR, INRIA Rennes, Examiner
    • Mme Hélène TOUZET, DR, CNRS – Université de Lille, Examiner

Awards and distinctions
  • SFBI's price for the best orale presentation during the nation conference JOBIM 2019, for the presentation CONSENT: Scalable self-correction of long reads with multiple sequence alignment.
Popularization
Involvment in the Science Fair 2016 - 2019
Université de Rouen Normandie