Summary

Publications and communications details

• Pierre Morisse, Claire Lemaitre, Fabrice Legeai. LRez: C++ API and toolkit for analyzing and managing Linked-Reads data. Bioinformatics Advances, 2021.
• Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment. Nature Scientific Reports, 2021.
• Camille Marchet, Pierre Morisse, Lolita Lecompte, Arnaud Lefebvre, Thierry Lecroq, Pierre Peterlongo, Antoine Limasset. ELECTOR: Evaluator for long reads correction methods. NAR Genomics and Bioinformatics, 2020.
• Pierre Morisse, Thierry Lecroq, Arnaud Lefebvre. Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph. Bioinformatics, Volume 34, Issue 24, 15 December 2018, Pages 4213-4222.

• Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment. RECOMB-SEQ 2019, Washington, USA, May 2019. (slides)

• Pierre Morisse, Fabrice Legeai, Claire Lemaitre. LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data. Actes des 22èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Paris, France, July 2021. (slides (alpha version))
• Pierre Morisse, Thierry Lecroq, Arnaud Lefebvre. Long-read error correction: a survey and qualitative comparison. Actes des 21èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Montpellier, France, July 2020. (slides)
• Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment. Actes des 20èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), pages 54-61, Nantes, France, July 2019. (slides)
• Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. HG-CoLoR: Hybrid-Graph for the error Correction of Long Reads. Actes des 18èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), pages 67-74, Lille, France, July 2017. (slides)

• Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment. Data Structures in Bioinformatics (DSB) 2019, Dortmund, Germany, February 2019. (slides)
• Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. Hybrid correction of long reads using a variable-order de Bruijn graph. Data Structures in Bioinformatics (DSB) 2018, Helsinki, Finland, May 2018. (slides)
• Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. Enhanced de Bruijn Graphs. Mathematical foundations in Bioinformatics (MatBio) 2017, London, United-Kingdom, September 2017. (slides)

• Pierre Morisse, Thierry Lecroq Arnaud Lefebvre. Impact of the dataset characteristics on the quality of long read error correction. SeqBIM 2019, Marne-La-Vallée, France, November 2019. (slides)
• Pierre Morisse, Antoine Limasset, Camille Marchet, Arnaud Lefebvre, Pierre Peterlongo, Thierry Lecroq. LoRSCo: Long Reads Self-Correction. SeqBio 2018, Rouen, France, November 2018. (slides)
• Camille Marchet, Pierre Morisse, Lolita Lecompte, Antoine Limasset, Arnaud Lefebvre, Thierry Lecroq, Pierre Peterlongo. ELECTOR: EvaLuator of Error Correction Tools for lOng Reads. SeqBio 2018, Rouen, France, November 2018. (slides)
• Pierre Morisse, Thierry Lecroq and Arnaud Lefebvre. HG-CoLoR: enHanced de Bruijn Graph for the error Correction of Long Reads. SeqBio 2017, Lille, France, November 2017. (slides)

• Pierre Morisse. Correction de données de séquençage de troisième génération. Theoretical Computer Science Seminar, Rouen, France, March 2019. (slides)
• Pierre Morisse. Extracting genomic k-mers in long reads. Symbiose Seminar, IRISA, Rennes, France, December 2017. (slides)

• Pierre Morisse, Claire Lemaitre, Fabrice Legeai. LRez: C++ API and toolkit for analyzing and managing Linked-Reads data. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) 2021, Paris, France, July 2021. (poster (alpha version))
• Camille Marchet, Pierre Morisse, Lolita Lecompte, Antoine Limasset, Arnaud Lefebvre, Pierre Peterlongo, Thierry Lecroq. ELECTOR: EvaLuation of Error Correction Tools for lOng Reads. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) 2018, Marseille, France, July 2018. (poster)

• Pierre Morisse, Fabrice Legeai, Claire Lemaitre. LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data.
• Pierre Morisse, Thierry Lecroq Arnaud Lefebvre. Long-read error correction: a survey and qualitative comparison.

• Pierre Morisse. Correction de données de séquençage de troisième génération. Université de Rouen Normandie, 2019. (manuscript in French) (slides in French)
• PhD defended of the September 26, 2019, before a jury composed of:


• M. Guillaume BLIN, PR, Université de Bordeaux, Reporter
• Mme Christine GASPIN, DR, INRA, Toulouse, Reporter
• M. Gregory KUCHEROV, DR, CNRS – Université Paris-Est Marne-La-Vallée, Examiner
• M. Thierry LECROQ, PR, Université de Rouen Normandie, Supervisor
• M. Arnaud LEFEBVRE, MCF, Université de Rouen Normandie, Advisor
• M. Pierre PETERLONGO, CR, INRIA Rennes, Examiner
• Mme Hélène TOUZET, DR, CNRS – Université de Lille, Examiner

• SFBI's price for the best orale presentation during the nation conference JOBIM 2019, for the presentation CONSENT: Scalable self-correction of long reads with multiple sequence alignment.